IL_4U50_389

3D structure

PDB id

4U50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Verrucarin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

4U50|1|6|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U50_389 not in the Motif Atlas

Homologous match to IL_4V88_409

Geometric discrepancy: 0.0873

The information below is about IL_4V88_409

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4U50|1|6|A|481
4U50|1|6|U|482
*
4U50|1|6|A|505
4U50|1|6|A|506
4U50|1|6|U|507

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain s9

40S ribosomal protein S9-A