3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CG*CAG
Length
5 nucleotides
Bulged bases
4U50|1|6|A|1427
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U50_429 not in the Motif Atlas
Homologous match to IL_4V88_452
Geometric discrepancy: 0.0946
The information below is about IL_4V88_452
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

4U50|1|6|C|1280
4U50|1|6|G|1281
*
4U50|1|6|C|1426
4U50|1|6|A|1427
4U50|1|6|G|1428

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain c6
40S ribosomal protein S16-A
Chain d0
40S ribosomal protein S20
Chain d9
40S ribosomal protein S29-A
Chain s2
40S ribosomal protein S2
Chain s3
40S ribosomal protein S3

Coloring options:


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