IL_4U50_469
3D structure
- PDB id
- 4U50 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Verrucarin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCACAC*GCGUGG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U50_469 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.2949
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
4U50|1|1|C|3161
4U50|1|1|C|3162
4U50|1|1|A|3163
4U50|1|1|C|3164
4U50|1|1|A|3165
4U50|1|1|C|3166
*
4U50|1|1|G|3284
4U50|1|1|C|3285
4U50|1|1|G|3286
4U50|1|1|U|3287
4U50|1|1|G|3288
4U50|1|1|G|3289
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: