3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CCACAC*GCGUGG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U50_469 not in the Motif Atlas
Geometric match to IL_5TBW_476
Geometric discrepancy: 0.2949
The information below is about IL_5TBW_476
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31007.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
5

Unit IDs

4U50|1|1|C|3161
4U50|1|1|C|3162
4U50|1|1|A|3163
4U50|1|1|C|3164
4U50|1|1|A|3165
4U50|1|1|C|3166
*
4U50|1|1|G|3284
4U50|1|1|C|3285
4U50|1|1|G|3286
4U50|1|1|U|3287
4U50|1|1|G|3288
4U50|1|1|G|3289

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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