IL_4U50_477

3D structure

PDB id

4U50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Verrucarin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

4U50|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U50_477 not in the Motif Atlas

Homologous match to IL_8P9A_422

Geometric discrepancy: 0.3311

The information below is about IL_8P9A_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57741.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

4U50|1|2|U|893
4U50|1|2|U|894
4U50|1|2|G|895
4U50|1|2|U|896
4U50|1|2|C|897
4U50|1|2|A|898
4U50|1|2|G|899
*
4U50|1|2|C|910
4U50|1|2|U|911
4U50|1|2|U|912
4U50|1|2|G|913
4U50|1|2|G|914
4U50|1|2|A|915
4U50|1|2|U|916
4U50|1|2|U|917
4U50|1|2|U|918
4U50|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

40S ribosomal protein S14-A

Chain S1

40S ribosomal protein S1-A