3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AAUA*UUCU
Length
8 nucleotides
Bulged bases
4U50|1|2|A|1346, 4U50|1|2|U|1347
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U50_504 not in the Motif Atlas
Homologous match to IL_8CRE_481
Geometric discrepancy: 0.2633
The information below is about IL_8CRE_481
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78800.1
Basepair signature
cWW-cSH-L-cWW
Number of instances in this motif group
2

Unit IDs

4U50|1|2|A|1345
4U50|1|2|A|1346
4U50|1|2|U|1347
4U50|1|2|A|1348
*
4U50|1|2|U|1377
4U50|1|2|U|1378
4U50|1|2|C|1379
4U50|1|2|U|1380

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C6
40S ribosomal protein S16-A
Chain D0
40S ribosomal protein S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3927 s