3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AUAAGGAUUG*CUUGAUUU
Length
18 nucleotides
Bulged bases
4U50|1|6|G|1228
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U50_511 not in the Motif Atlas
Homologous match to IL_8P9A_470
Geometric discrepancy: 0.177
The information below is about IL_8P9A_470
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28304.1
Basepair signature
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
Number of instances in this motif group
1

Unit IDs

4U50|1|6|A|1224
4U50|1|6|U|1225
4U50|1|6|A|1226
4U50|1|6|A|1227
4U50|1|6|G|1228
4U50|1|6|G|1229
4U50|1|6|A|1230
4U50|1|6|U|1231
4U50|1|6|U|1232
4U50|1|6|G|1233
*
4U50|1|6|C|1252
4U50|1|6|U|1253
4U50|1|6|U|1254
4U50|1|6|G|1255
4U50|1|6|A|1256
4U50|1|6|U|1257
4U50|1|6|U|1258
4U50|1|6|U|1259

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain c0
40S ribosomal protein S10-A
Chain c2
40S ribosomal protein S12
Chain d9
40S ribosomal protein S29-A
Chain e1
Ubiquitin-40S ribosomal protein S31

Coloring options:


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