IL_8P9A_470

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUAAGGAUUG*CUUGAUUU

Length

18 nucleotides

Bulged bases

8P9A|1|sR|G|1228, 8P9A|1|sR|U|1257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28304.1

Basepair signature

cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8P9A|1|sR|A|1224
8P9A|1|sR|U|1225
8P9A|1|sR|A|1226
8P9A|1|sR|A|1227
8P9A|1|sR|G|1228
8P9A|1|sR|G|1229
8P9A|1|sR|A|1230
8P9A|1|sR|U|1231
8P9A|1|sR|U|1232
8P9A|1|sR|G|1233
*
8P9A|1|sR|C|1252
8P9A|1|sR|U|1253
8P9A|1|sR|U|1254
8P9A|1|sR|G|1255
8P9A|1|sR|A|1256
8P9A|1|sR|U|1257
8P9A|1|sR|U|1258
8P9A|1|sR|U|1259

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c0

40S ribosomal protein S10-A

Chain d9

Small ribosomal subunit protein uS14A

Chain e1

Ubiquitin