IL_4U52_023

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U52_023 not in the Motif Atlas

Homologous match to IL_5TBW_023

Geometric discrepancy: 0.0411

The information below is about IL_5TBW_023

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4U52|1|1|G|725
4U52|1|1|G|726
4U52|1|1|G|727
4U52|1|1|G|728
*
4U52|1|1|U|741
4U52|1|1|G|742
4U52|1|1|C|743
4U52|1|1|A|744
4U52|1|1|C|745

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M8

60S ribosomal protein L18-A

Chain N9

60S ribosomal protein L29