Motif IL_07235.3 Version IL_07235.3 of this group appears in releases 3.88 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_023 | 5TBW | 0.2073 | 0 | UAA/GAN | 1 | LSU rRNA | U | 741 | G | 742 | C | 743 | A | 744 | C | 745 | * | G | 725 | G | 726 | G | 727 | G | 728 | cWW | ntSH | tHS | |
| 2 | IL_8C3A_025 | 8C3A | 0.2355 | 0 | UAA/GAN (H) | 1 | LSU rRNA | U | 737 | G | 738 | C | 739 | A | 740 | C | 741 | * | G | 723 | G | 724 | G | 725 | G | 726 | cWW | ntSH | tHS | cWW |
| 3 | IL_8XZL_001 | 8XZL | 0.2306 | 0 | A | RNA (53-MER) | U | 6 | G | 7 | U | 8 | A | 9 | C | 10 | * | G | 45 | G | 46 | A | 47 | G | 48 | cWW | tSH | tHS | cWW | |
| 4 | IL_5J7L_303 | 5J7L | 0.1971 | 0 | UAA/GAN variation | DA | LSU rRNA | U | 1542 | G | 1543 | A | 1544 | A | 1545 | G | 1546 | * | C | 1526 | G | 1527 | A | 1528 | G | 1529 | cWW | ntSH | tHS | cWW |
| 5 | IL_6CZR_170 | 6CZR | 0.1480 | 0 | UAA/GAN variation | 1a | SSU rRNA | C | 1414 | G | 1415 | A | 1416 | A | 1417 | G | 1418 | * | C | 1444 | G | 1445 | A | 1446 | G | 1447 | cWW | ntSH | ntHS | cWW |
| 6 | IL_4LFB_062 | 4LFB | 0.0000 | 0 | UAA/GAN variation | A | SSU rRNA | C | 1431 | G | 1432 | A | 1433 | A | 1434 | G | 1435 | * | C | 1466 | G | 1467 | A | 1468 | G | 1469 | cWW | tSH | tHS | cWW |
| 7 | IL_4V9F_094 | 4V9F | 0.2698 | 1 | UAA/GAN | 0 | LSU rRNA | G | 2754 | G | 2755 | U | 2756 | A | 2757 | G | 2758 | * | U | 2724 | G | 2725 | A | 2727 | C | 2728 | cWW | |||
| 8 | IL_8VTW_059 | 8VTW | 0.2888 | 0 | UAA/GAN (H) | 1A | LSU rRNA | A | 1469 | G | 1470 | A | 1471 | A | 1472 | G | 1473 | * | U | 1518 | G | 1519 | G | 1520 | U | 1523 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCAC*GGGG | 2 |
| CGAAG*CGAG | 2 |
| UGUAC*GGAG | 1 |
| UGAAG*CGAG | 1 |
| GGUAG*UGUAC | 1 |
| AGAAG*UGGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*GA | 3 |
| GCA*GG | 2 |
| GUA*GA | 1 |
| GUA*GUA | 1 |
| GAA*GG | 1 |
- Annotations
-
- UAA/GAN variation (3)
- UAA/GAN (2)
- UAA/GAN (H) (2)
- (1)
- Basepair signature
- cWW-tSH-L-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.22 | Max 0.37
Coloring options: