IL_4U52_179
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUAUU*AAGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U52_179 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3723
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
4U52|1|2|G|885
4U52|1|2|U|886
4U52|1|2|A|887
4U52|1|2|U|888
4U52|1|2|U|889
*
4U52|1|2|A|923
4U52|1|2|A|924
4U52|1|2|G|925
4U52|1|2|A|926
4U52|1|2|C|927
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C4
- 40S ribosomal protein S14-A
- Chain D6
- 40S ribosomal protein S26-B
- Chain L2
- 60S ribosomal protein L2-A
- Chain Q3
- 60S ribosomal protein L43-A
- Chain S1
- 40S ribosomal protein S1-A
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