IL_4U52_181

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

4U52|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U52_181 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.308

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

4U52|1|2|G|895
4U52|1|2|U|896
4U52|1|2|C|897
4U52|1|2|A|898
4U52|1|2|G|899
*
4U52|1|2|C|910
4U52|1|2|U|911
4U52|1|2|U|912
4U52|1|2|G|913
4U52|1|2|G|914
4U52|1|2|A|915
4U52|1|2|U|916
4U52|1|2|U|917

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

40S ribosomal protein S14-A

Chain S1

40S ribosomal protein S1-A