IL_4U52_187

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U52_187 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0648

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4U52|1|2|G|1111
4U52|1|2|G|1112
4U52|1|2|A|1113
4U52|1|2|G|1114
4U52|1|2|U|1115
4U52|1|2|A|1116
4U52|1|2|U|1117
4U52|1|2|G|1118
*
4U52|1|2|U|1129
4U52|1|2|G|1130
4U52|1|2|A|1131
4U52|1|2|A|1132
4U52|1|2|A|1133
4U52|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain Q1

60S ribosomal protein L41-A