IL_4U53_052
3D structure
- PDB id
- 4U53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 4U53|1|1|C|1196, 4U53|1|1|A|1302, 4U53|1|1|U|1305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U53_052 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0426
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4U53|1|1|G|1194
4U53|1|1|A|1195
4U53|1|1|C|1196
4U53|1|1|A|1197
4U53|1|1|C|1198
4U53|1|1|C|1199
4U53|1|1|A|1200
4U53|1|1|C|1201
4U53|1|1|A|1202
4U53|1|1|A|1203
4U53|1|1|A|1204
4U53|1|1|A|1205
*
4U53|1|1|U|1299
4U53|1|1|G|1300
4U53|1|1|A|1301
4U53|1|1|A|1302
4U53|1|1|A|1303
4U53|1|1|A|1304
4U53|1|1|U|1305
4U53|1|1|G|1306
4U53|1|1|G|1307
4U53|1|1|A|1308
4U53|1|1|U|1309
4U53|1|1|G|1310
4U53|1|1|G|1311
4U53|1|1|C|1312
4U53|1|1|G|1313
4U53|1|1|C|1314
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain L3
- 60S ribosomal protein L3
- Chain L7
- 60S ribosomal protein L7-A
- Chain M0
- 60S ribosomal protein L10
- Chain M6
- 60S ribosomal protein L16-A
- Chain O3
- 60S ribosomal protein L33-A
- Chain Q0
- Ubiquitin-60S ribosomal protein L40
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