IL_4U53_101

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGCU*GAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U53_101 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.1122

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

4U53|1|1|G|2823
4U53|1|1|G|2824
4U53|1|1|C|2825
4U53|1|1|U|2826
*
4U53|1|1|G|2863
4U53|1|1|A|2864
4U53|1|1|U|2865
4U53|1|1|U|2866
4U53|1|1|C|2867

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M0

60S ribosomal protein L10

Chain N9

60S ribosomal protein L29