Motif IL_50458.1 Version IL_50458.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-5 | 3-7 | 4-5 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8C3A_473 | 8C3A | 0.3578 | 0 | CM | SSU rRNA | A | 1740 | A | 1741 | A | 1742 | A | 1743 | G | 1744 | * | C | 1631 | G | 1632 | C | 1633 | U | 1634 | cWW | cWWa | ncWW | cWW | ||
| 2 | IL_8C3A_111 | 8C3A | 0.0000 | 0 | 1 | LSU rRNA | G | 2835 | A | 2836 | U | 2837 | U | 2838 | C | 2839 | * | G | 2795 | G | 2796 | C | 2797 | U | 2798 | cWW | cWWa | ncSH | ncWW | cWW | |
| 3 | IL_1J2B_001 | 1J2B | 0.4208 | 0 | C | tRNA | G | 943 | G | 944 | A | 945 | G | 946 | G | 947 | * | C | 926 | G | 927 | C | 928 | C | 929 | cWW | cWW | ||||
| 4 | IL_8DK7_001 | 8DK7 | 0.5777 | 1 | C | RNA (34-MER) | G | 4 | A | 5 | U | 6 | A | 7 | C | 8 | * | G | 27 | A | 29 | G | 30 | C | 31 | ncWW | cWW | ntSH | cSH | cWW | |
| 5 | IL_8D28_003 | 8D28 | 0.5254 | 1 | B | RNA (33-MER) | G | 4 | A | 5 | U | 6 | A | 7 | C | 8 | * | G | 26 | A | 28 | G | 29 | C | 30 | cWW | cWW | ntSH | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAC*GCAGC | 2 |
| AAAAG*CGCU | 1 |
| GAUUC*GGCU | 1 |
| GGAGG*CGCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA*CAG | 2 |
| AAA*GC | 1 |
| AUU*GC | 1 |
| GAG*GC | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Heat map statistics
- Min 0.24 | Avg 0.40 | Max 0.66
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