IL_4U53_134
3D structure
- PDB id
- 4U53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUCA*UAU
- Length
- 7 nucleotides
- Bulged bases
- 4U53|1|2|C|25
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U53_134 not in the Motif Atlas
- Geometric match to IL_4KR9_001
- Geometric discrepancy: 0.157
- The information below is about IL_4KR9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
4U53|1|2|G|23
4U53|1|2|U|24
4U53|1|2|C|25
4U53|1|2|A|26
*
4U53|1|2|U|600
4U53|1|2|A|601
4U53|1|2|U|602
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D3
- 40S ribosomal protein S23-A
- Chain S9
- 40S ribosomal protein S9-A
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