IL_4U53_144

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4U53|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U53_144 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1066

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4U53|1|2|G|143
4U53|1|2|U|144
4U53|1|2|A|145
4U53|1|2|U|146
4U53|1|2|A|147
4U53|1|2|A|148
4U53|1|2|C|149
*
4U53|1|2|G|165
4U53|1|2|C|166
4U53|1|2|U|167
4U53|1|2|A|168
4U53|1|2|A|169
4U53|1|2|U|170
4U53|1|2|A|171
4U53|1|2|C|172

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A