IL_4U53_153

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

4U53|1|2|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U53_153 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.0801

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4U53|1|2|G|363
4U53|1|2|G|364
4U53|1|2|G|365
*
4U53|1|2|C|376
4U53|1|2|G|377
4U53|1|2|A|378
4U53|1|2|U|379
4U53|1|2|U|380
4U53|1|2|C|381

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A