IL_4U53_488

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U53_488 not in the Motif Atlas

Homologous match to IL_8P9A_411

Geometric discrepancy: 0.1683

The information below is about IL_8P9A_411

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

4U53|1|6|C|709
4U53|1|6|U|710
4U53|1|6|U|711
4U53|1|6|G|712
*
4U53|1|6|C|726
4U53|1|6|U|727
4U53|1|6|U|728
4U53|1|6|G|729

Current chains

Chain 6

18S ribosomal RNA

Nearby chains