IL_4U55_139

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

4U55|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U55_139 not in the Motif Atlas

Geometric match to IL_4V88_387

Geometric discrepancy: 0.0705

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4U55|1|2|G|42
4U55|1|2|A|43
4U55|1|2|U|44
4U55|1|2|U|45
4U55|1|2|A|46
4U55|1|2|A|47
4U55|1|2|G|48
*
4U55|1|2|C|431
4U55|1|2|G|432
4U55|1|2|C|433

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A