IL_4U55_209

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4U55|1|2|C|1637, 4U55|1|2|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U55_209 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0839

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

4U55|1|2|C|1636
4U55|1|2|C|1637
4U55|1|2|G|1638
*
4U55|1|2|C|1764
4U55|1|2|A|1765
4U55|1|2|A|1766
4U55|1|2|G|1767

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D6

40S ribosomal protein S26-B

Chain SM

Suppressor protein STM1