IL_4U55_354

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U55_354 not in the Motif Atlas

Homologous match to IL_5TBW_128

Geometric discrepancy: 0.1442

The information below is about IL_5TBW_128

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4U55|1|5|C|3235
4U55|1|5|U|3236
4U55|1|5|U|3237
4U55|1|5|G|3238
*
4U55|1|5|C|3249
4U55|1|5|U|3250
4U55|1|5|U|3251
4U55|1|5|G|3252

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m4

60S ribosomal protein L14-A

Chain m6

60S ribosomal protein L16-A