IL_4U55_401

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCUUG*CUUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U55_401 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.0976

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4U55|1|6|C|708
4U55|1|6|C|709
4U55|1|6|U|710
4U55|1|6|U|711
4U55|1|6|G|712
*
4U55|1|6|C|726
4U55|1|6|U|727
4U55|1|6|U|728
4U55|1|6|G|729
4U55|1|6|G|730

Current chains

Chain 6

18S ribosomal RNA

Nearby chains