IL_4U55_465

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUG*CGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U55_465 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2528

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4U55|1|1|C|1069
4U55|1|1|U|1070
4U55|1|1|U|1071
4U55|1|1|G|1072
*
4U55|1|1|C|1086
4U55|1|1|G|1087
4U55|1|1|U|1088
4U55|1|1|G|1089

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N1

60S ribosomal protein L21-A

Chain N9

60S ribosomal protein L29