IL_4U56_475

3D structure

PDB id

4U56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Blasticidin S bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGGUUG*CAACGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U56_475 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.2674

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4U56|1|2|C|646
4U56|1|2|G|647
4U56|1|2|G|648
4U56|1|2|U|649
4U56|1|2|U|650
4U56|1|2|G|651
*
4U56|1|2|C|683
4U56|1|2|A|684
4U56|1|2|A|685
4U56|1|2|C|686
4U56|1|2|G|687
4U56|1|2|G|688

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D2

40S ribosomal protein S22-A

Chain S9

40S ribosomal protein S9-A