IL_4U56_491
3D structure
- PDB id
- 4U56 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Blasticidin S bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GAUA*UGC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U56_491 not in the Motif Atlas
- Homologous match to IL_8P9A_292
- Geometric discrepancy: 0.1264
- The information below is about IL_8P9A_292
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15698.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
4U56|1|5|G|1618
4U56|1|5|A|1619
4U56|1|5|U|1620
4U56|1|5|A|1621
*
4U56|1|5|U|1824
4U56|1|5|G|1825
4U56|1|5|C|1826
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain o8
- 60S ribosomal protein L38
Coloring options: