IL_4U67_007

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_007 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.0978

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4U67|1|X|G|215
4U67|1|X|U|216
4U67|1|X|U|217
4U67|1|X|A|218
4U67|1|X|G|219
4U67|1|X|U|220
4U67|1|X|A|221
4U67|1|X|G|222
*
4U67|1|X|C|230
4U67|1|X|G|231
4U67|1|X|A|232
4U67|1|X|A|233
4U67|1|X|C|234
4U67|1|X|C|235
4U67|1|X|C|236

Current chains

Chain X

23s RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15