IL_4U67_009

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GAAC*GAGUGAAAGAGAAC

Length

18 nucleotides

Bulged bases

4U67|1|X|G|514, 4U67|1|X|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_009 not in the Motif Atlas

Homologous match to IL_7A0S_009

Geometric discrepancy: 0.0712

The information below is about IL_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

10

Unit IDs

4U67|1|X|G|492
4U67|1|X|A|493
4U67|1|X|A|494
4U67|1|X|C|495
*
4U67|1|X|G|506
4U67|1|X|A|507
4U67|1|X|G|508
4U67|1|X|U|509
4U67|1|X|G|510
4U67|1|X|A|511
4U67|1|X|A|512
4U67|1|X|A|513
4U67|1|X|G|514
4U67|1|X|A|515
4U67|1|X|G|516
4U67|1|X|A|517
4U67|1|X|A|518
4U67|1|X|C|519

Current chains

Chain X

23s RNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24