IL_4U67_012

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_012 not in the Motif Atlas

Homologous match to IL_4WF9_019

Geometric discrepancy: 0.1397

The information below is about IL_4WF9_019

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4U67|1|X|U|616
4U67|1|X|U|617
4U67|1|X|A|618
4U67|1|X|A|619
4U67|1|X|G|620
*
4U67|1|X|C|629
4U67|1|X|G|630
4U67|1|X|G|631
4U67|1|X|A|632
4U67|1|X|G|633

Current chains

Chain X

23s RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15