IL_4U67_017

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

UGAAAC*GCGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_017 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.1092

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4U67|1|X|U|716
4U67|1|X|G|717
4U67|1|X|A|718
4U67|1|X|A|719
4U67|1|X|A|720
4U67|1|X|C|721
*
4U67|1|X|G|736
4U67|1|X|C|737
4U67|1|X|G|738
4U67|1|X|G|739
4U67|1|X|A|740
4U67|1|X|G|741

Current chains

Chain X

23s RNA

Nearby chains

Chain A

50S ribosomal protein L2