IL_4U67_023

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GACC*GCGUU

Length

9 nucleotides

Bulged bases

4U67|1|X|C|939

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_023 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.3486

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4U67|1|X|G|861
4U67|1|X|A|862
4U67|1|X|C|863
4U67|1|X|C|864
*
4U67|1|X|G|938
4U67|1|X|C|939
4U67|1|X|G|940
4U67|1|X|U|941
4U67|1|X|U|942

Current chains

Chain X

23s RNA

Nearby chains

Chain W

50S ribosomal protein L30