IL_4U67_039

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4U67|1|X|G|1261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_039 not in the Motif Atlas

Homologous match to IL_7A0S_041

Geometric discrepancy: 0.1077

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

4U67|1|X|C|1210
4U67|1|X|G|1211
4U67|1|X|U|1212
*
4U67|1|X|A|1260
4U67|1|X|G|1261
4U67|1|X|U|1262
4U67|1|X|G|1263

Current chains

Chain X

23s RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain N

50S ribosomal protein L20