IL_4U67_041

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4U67|1|X|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_041 not in the Motif Atlas

Homologous match to IL_4WF9_046

Geometric discrepancy: 0.1679

The information below is about IL_4WF9_046

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

4U67|1|X|C|1221
4U67|1|X|G|1222
4U67|1|X|G|1223
4U67|1|X|A|1224
4U67|1|X|G|1225
4U67|1|X|A|1226
4U67|1|X|A|1227
4U67|1|X|G|1228
*
4U67|1|X|U|1247
4U67|1|X|G|1248
4U67|1|X|G|1249
4U67|1|X|A|1250
4U67|1|X|G|1251

Current chains

Chain X

23s RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22