IL_4U67_043

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_043 not in the Motif Atlas

Homologous match to IL_7A0S_045

Geometric discrepancy: 0.0776

The information below is about IL_7A0S_045

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4U67|1|X|A|1275
4U67|1|X|U|1276
4U67|1|X|G|1277
4U67|1|X|A|1278
4U67|1|X|G|1279
4U67|1|X|U|1280
4U67|1|X|A|1281
4U67|1|X|A|1282
*
4U67|1|X|U|1994
4U67|1|X|G|1995
4U67|1|X|A|1996
4U67|1|X|A|1997
4U67|1|X|A|1998
4U67|1|X|U|1999
4U67|1|X|U|2000

Current chains

Chain X

23s RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32