IL_4U67_056

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_056 not in the Motif Atlas

Homologous match to IL_7A0S_059

Geometric discrepancy: 0.0842

The information below is about IL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.5

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4U67|1|X|G|1668
4U67|1|X|A|1669
4U67|1|X|G|1670
4U67|1|X|A|1671
4U67|1|X|A|1672
4U67|1|X|C|1673
*
4U67|1|X|G|1987
4U67|1|X|A|1988
4U67|1|X|C|1989

Current chains

Chain X

23s RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17