IL_4U67_060

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

4U67|1|X|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_060 not in the Motif Atlas

Geometric match to IL_7A0S_063

Geometric discrepancy: 0.0783

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4U67|1|X|C|1703
4U67|1|X|G|1704
4U67|1|X|U|1705
4U67|1|X|A|1706
4U67|1|X|A|1707
4U67|1|X|C|1708
*
4U67|1|X|G|1713
4U67|1|X|A|1714
4U67|1|X|A|1715
4U67|1|X|G|1716
4U67|1|X|A|1717
4U67|1|X|A|1718
4U67|1|X|G|1719

Current chains

Chain X

23s RNA

Nearby chains

Chain A

50S ribosomal protein L2