IL_4U67_075

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_075 not in the Motif Atlas

Homologous match to IL_4WF9_087

Geometric discrepancy: 0.1687

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

4U67|1|X|C|2329
4U67|1|X|G|2330
4U67|1|X|A|2331
4U67|1|X|G|2332
*
4U67|1|X|C|2343
4U67|1|X|G|2344
4U67|1|X|A|2345
4U67|1|X|G|2346

Current chains

Chain X

23s RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain T

50S ribosomal protein L27