IL_4U67_081

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_081 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1324

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

4U67|1|X|C|2445
4U67|1|X|C|2446
4U67|1|X|G|2447
4U67|1|X|A|2448
4U67|1|X|G|2449
*
4U67|1|X|C|2459
4U67|1|X|G|2460
4U67|1|X|G|2461
4U67|1|X|C|2462
4U67|1|X|G|2463

Current chains

Chain X

23s RNA

Nearby chains

Chain J

50S ribosomal protein L16