IL_4U67_092

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4U67|1|X|A|2745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_092 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1316

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4U67|1|X|G|2717
4U67|1|X|A|2718
4U67|1|X|U|2719
4U67|1|X|A|2720
4U67|1|X|A|2721
4U67|1|X|C|2722
*
4U67|1|X|G|2742
4U67|1|X|G|2743
4U67|1|X|A|2744
4U67|1|X|A|2745
4U67|1|X|G|2746
4U67|1|X|C|2747

Current chains

Chain X

23s RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13