IL_4U67_096
3D structure
- PDB id
- 4U67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.65 Å
Loop
- Sequence
- GCAC*GCAGC
- Length
- 9 nucleotides
- Bulged bases
- 4U67|1|Y|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U67_096 not in the Motif Atlas
- Geometric match to IL_7A0S_102
- Geometric discrepancy: 0.2955
- The information below is about IL_7A0S_102
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform with intercalation
- Motif group
- IL_58502.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
4U67|1|Y|G|18
4U67|1|Y|C|19
4U67|1|Y|A|20
4U67|1|Y|C|21
*
4U67|1|Y|G|66
4U67|1|Y|C|67
4U67|1|Y|A|68
4U67|1|Y|G|69
4U67|1|Y|C|70
Current chains
- Chain Y
- 5s RNA
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain S
- 50S ribosomal protein L25
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: