Motif IL_58502.1 Version IL_58502.1 of this group appears in releases 3.77 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-4 | 3-5 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1MFQ_001 | 1MFQ | 0.7041 | 0 | A | SRP RNA | C | 230 | A | 231 | G | 232 | U | 233 | A | 234 | * | U | 117 | A | 118 | A | 119 | G | 120 | cWW | cWW | |||||
| 2 | IL_1L9A_001 | 1L9A | 0.9848 | 0 | B | signal recognition particle RNA S domain | C | 230 | A | 231 | G | 232 | U | 233 | A | 234 | * | U | 117 | A | 118 | A | 119 | G | 120 | cWW | ncwW | cWW | ||||
| 3 | IL_7A0S_058 | 7A0S | 0.6938 | 1 | X | LSU rRNA | G | 1503 | G | 1504 | U | 1505 | A | 1507 | G | 1508 | * | C | 1514 | U | 1515 | A | 1516 | C | 1517 | cWW | cWW | ncWH | ncWW | ncWW | ||
| 4 | IL_7A0S_102 | 7A0S | 0.4187 | 0 | Major groove platform with intercalation | Y | 5S rRNA | G | 66 | C | 67 | A | 68 | G | 69 | C | 70 | * | G | 18 | C | 19 | A | 20 | C | 21 | ncWW | ncWW | cSH | ncWW | cWW | |
| 5 | IL_8DK7_002 | 8DK7 | 0.0000 | 2 | C | RNA (34-MER) | C | 21 | C | 22 | C | 23 | G | 26 | G | 27 | * | C | 8 | C | 9 | A | 10 | G | 11 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUA*UAAG | 2 |
| GGUCAG*CUAC | 1 |
| GCAGC*GCAC | 1 |
| CCCUUGG*CCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGU*AA | 2 |
| GUCA*UA | 1 |
| CAG*CA | 1 |
| CCUUG*CA | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Major groove platform with intercalation (1)
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Heat map statistics
- Min 0.27 | Avg 0.46 | Max 0.98
Coloring options: