IL_4U67_101

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GGC*GACC

Length

7 nucleotides

Bulged bases

4U67|1|X|A|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_101 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.1874

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

4U67|1|X|G|35
4U67|1|X|G|36
4U67|1|X|C|37
*
4U67|1|X|G|454
4U67|1|X|A|455
4U67|1|X|C|456
4U67|1|X|C|457

Current chains

Chain X

23s RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain N

50S ribosomal protein L20

Chain R

50S ribosomal protein L24