IL_4U67_109

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CUGG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_109 not in the Motif Atlas

Geometric match to IL_8ID2_001

Geometric discrepancy: 0.1721

The information below is about IL_8ID2_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

41

Unit IDs

4U67|1|X|C|2068
4U67|1|X|U|2069
4U67|1|X|G|2070
4U67|1|X|G|2071
*
4U67|1|X|C|2210
4U67|1|X|U|2211
4U67|1|X|U|2212
4U67|1|X|G|2213

Current chains

Chain X

23s RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28