3D structure

PDB id
4U6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of T-2 toxin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUCAG*CUUGGAUU
Length
13 nucleotides
Bulged bases
4U6F|1|6|G|913
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U6F_413 not in the Motif Atlas
Homologous match to IL_4V88_434
Geometric discrepancy: 0.0678
The information below is about IL_4V88_434
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_45067.5
Basepair signature
cWW-tSH-tSS-tHS-R-cWW-cWW-R
Number of instances in this motif group
16

Unit IDs

4U6F|1|6|G|895
4U6F|1|6|U|896
4U6F|1|6|C|897
4U6F|1|6|A|898
4U6F|1|6|G|899
*
4U6F|1|6|C|910
4U6F|1|6|U|911
4U6F|1|6|U|912
4U6F|1|6|G|913
4U6F|1|6|G|914
4U6F|1|6|A|915
4U6F|1|6|U|916
4U6F|1|6|U|917

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain c4
40S ribosomal protein S14-A
Chain s1
40S ribosomal protein S1-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1993 s