IL_4U6F_485

3D structure

PDB id

4U6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T-2 toxin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUAU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U6F_485 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2223

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4U6F|1|5|A|3168
4U6F|1|5|U|3169
4U6F|1|5|A|3170
4U6F|1|5|U|3171
*
4U6F|1|5|A|3279
4U6F|1|5|U|3280
4U6F|1|5|U|3281
4U6F|1|5|U|3282

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain o3

60S ribosomal protein L33-A