IL_4UE5_017

3D structure

PDB id

4UE5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for targeting and elongation arrest of Bacillus signal recognition particle

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCAGGU*GAGCAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UE5_017 not in the Motif Atlas

Homologous match to IL_1MFQ_007

Geometric discrepancy: 0.1224

The information below is about IL_1MFQ_007

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

4UE5|1|A|C|190
4UE5|1|A|C|191
4UE5|1|A|A|192
4UE5|1|A|G|193
4UE5|1|A|G|194
4UE5|1|A|U|195
*
4UE5|1|A|G|204
4UE5|1|A|A|205
4UE5|1|A|G|206
4UE5|1|A|C|207
4UE5|1|A|A|208
4UE5|1|A|G|209

Current chains

Chain A

7S RNA

Nearby chains

Chain D

SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN

Chain F

SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN