IL_4UG0_007

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

4UG0|1|L5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_007 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.3291

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4UG0|1|L5|C|118
4UG0|1|L5|G|119
4UG0|1|L5|A|120
4UG0|1|L5|A|121
*
4UG0|1|L5|U|152
4UG0|1|L5|G|153

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LG

60S RIBOSOMAL PROTEIN L7A

Chain LN

60S RIBOSOMAL PROTEIN L15

Chain Lh

60S RIBOSOMAL PROTEIN L35