IL_4UG0_042

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGAG*CGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_042 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.347

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4UG0|1|L5|C|1430
4UG0|1|L5|C|1431
4UG0|1|L5|G|1432
4UG0|1|L5|A|1433
4UG0|1|L5|G|1434
*
4UG0|1|L5|C|1450
4UG0|1|L5|G|1451
4UG0|1|L5|A|1452
4UG0|1|L5|G|1453
4UG0|1|L5|G|1454

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LQ

60S RIBOSOMAL PROTEIN L18