IL_4UG0_064

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4UG0|1|L5|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_064 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.3253

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4UG0|1|L5|G|1946
4UG0|1|L5|U|1947
4UG0|1|L5|G|1948
*
4UG0|1|L5|C|2035
4UG0|1|L5|C|2036

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LH

60S RIBOSOMAL PROTEIN L9

Chain LI

60S RIBOSOMAL PROTEIN L10-LIKE

Chain LS

60S RIBOSOMAL PROTEIN L18A

Chain Lm

UBIQUITIN-60S RIBOSOMAL PROTEIN L40