IL_4UG0_088

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UG0_088 not in the Motif Atlas

Homologous match to IL_5TBW_080

Geometric discrepancy: 0.4103

The information below is about IL_5TBW_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74125.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4UG0|1|L5|G|2896
4UG0|1|L5|G|2897
*
4UG0|1|L5|C|3602
4UG0|1|L5|G|3603
4UG0|1|L5|A|3604
4UG0|1|L5|C|3605

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S RIBOSOMAL PROTEIN L19

Chain S2

Small subunit ribosomal RNA; SSU rRNA